Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100705506Transmembrane protein 240a. (175 aa)    
Predicted Functional Partners:
cpsf4
Cleavage and polyadenylation specific factor 4.
   
 0.962
WDR33
WD repeat domain 33.
    
 0.961
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.960
LOC100706148
FIP1 like 1b (S. cerevisiae).
    
 0.958
cpsf1
Cleavage and polyadenylation specific factor 1.
    
 0.958
polr2a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.925
gtf2b
General transcription factor IIB.
   
 0.899
CPSF3
Cleavage and polyadenylation specific factor 3.
   
 0.884
LOC100692710
Cleavage and polyadenylation specific factor 3.
   
 0.884
twf2
WD repeat domain 82.
   
 0.882
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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