STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnfsf12TNF superfamily member 12; Belongs to the tumor necrosis factor family. (273 aa)    
Predicted Functional Partners:
tnfsf13b
TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.
   
 0.832
LOC100690570
TNF superfamily member 11; Belongs to the tumor necrosis factor family.
     
 0.764
LOC100534578
Tumor necrosis factor b (TNF superfamily, member 2).
   
 
 0.730
LOC100695394
TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.
   
 0.723
LOC100703882
Tumor necrosis factor ligand superfamily member 6; Belongs to the tumor necrosis factor family.
     
 0.633
LOC100697176
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.604
traf3
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.604
LOC100690186
Tumor necrosis factor receptor superfamily, member 11a, NFKB activator.
     
 0.604
ENSONIP00000016286
annotation not available
   
 
 0.584
LOC100701610
Baculoviral IAP repeat containing 7.
    
 0.544
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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