Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
thoc6THO complex 6. (394 aa)    
Predicted Functional Partners:
thoc1
THO complex 1.
    
 0.999
Thoc2
THO complex 2.
    
 0.999
thoc5
THO complex 5.
   
 0.999
thoc7
THO complex 7.
    
 0.999
thoc3
THO complex 3.
   
 0.999
alyref
Aly/REF export factor.
   
 0.985
LOC100709252
RRM domain-containing protein.
   
 0.940
ncbp3
Nuclear cap binding subunit 3.
    
 
 0.931
LOC100711348
DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B.
   
 0.929
LOC100704968
Uncharacterized protein.
   
 0.929
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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