STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
jmjd6Jumonji domain containing 6, arginine demethylase and lysine hydroxylase. (403 aa)    
Predicted Functional Partners:
I3J0D9_ORENI
Bromodomain containing 4.
    
 
 0.600
LOC100701446
Uncharacterized protein.
    
 
 0.600
I3KSY9_ORENI
Bromodomain, testis-specific.
    
 
 0.600
LOC100696311
Bromodomain containing 2.
    
 
 0.600
I3K5P5_ORENI
Uncharacterized protein.
    
 
 0.600
LOC100693386
Uncharacterized protein.
    
 
 0.600
BRD3
Bromodomain containing 3b.
    
 
 0.600
kdm8
Lysine (K)-specific demethylase 8.
      
 0.589
LOC100693321
Si:ch211-212d10.2.
    
 
 0.579
gulp1
GULP PTB domain containing engulfment adaptor 1a.
      
 0.573
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.