Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
jmjd8Jumonji domain containing 8. (270 aa)    
Predicted Functional Partners:
etf1
Eukaryotic translation termination factor 1b.
    
 0.870
depdc5
DEP domain containing 5.
   
 
  0.799
wdr59
WD repeat domain 59.
     
  0.795
nprl2
NPR2 like, GATOR1 complex subunit.
     
  0.795
Mios
Missing oocyte, meiosis regulator, homolog (Drosophila).
     
  0.795
seh1l
SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family.
     
  0.795
Nprl3
NPR3-like, GATOR1 complex subunit.
     
  0.795
Sec13
SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.
     
  0.795
riox2
Bifunctional lysine-specific demethylase and histidyl-hydroxylase; Oxygenase that can act as both a histone lysine demethylase and a ribosomal histidine hydroxylase.
      
 0.718
tyw5
tRNA-yW synthesizing protein 5.
      
 0.700
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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