LOC100703328 protein (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC100703328

Si:dkey-16l2.16. (208 aa)

Predicted Functional Partners:

rab35

0.916

I3K0A7_ORENI

0.909

ift52

0.875

ift22

0.873

I3KF91_ORENI

0.868

ift81

0.861

ift80

0.860

LOC100708600

0.854

LOC100709395

0.854

LOC100708443

0.854

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I3K0A7_ORENI	LOC100703328	ENSONIP00000080845	ENSONIP00000011867	DENN/MADD domain containing 1A.	Si:dkey-16l2.16.	0.909
I3K0A7_ORENI	LOC100708443	ENSONIP00000080845	ENSONIP00000064167	DENN/MADD domain containing 1A.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.502
I3K0A7_ORENI	LOC100708600	ENSONIP00000080845	ENSONIP00000039037	DENN/MADD domain containing 1A.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.502
I3K0A7_ORENI	LOC100709395	ENSONIP00000080845	ENSONIP00000046236	DENN/MADD domain containing 1A.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.502
I3K0A7_ORENI	rab35	ENSONIP00000080845	ENSONIP00000064238	DENN/MADD domain containing 1A.	RAB35, member RAS oncogene family b.	0.909
I3KF91_ORENI	LOC100703328	ENSONIP00000041602	ENSONIP00000011867	Intraflagellar transport 88 homolog.	Si:dkey-16l2.16.	0.868
I3KF91_ORENI	ift22	ENSONIP00000041602	ENSONIP00000011712	Intraflagellar transport 88 homolog.	Intraflagellar transport 22 homolog (Chlamydomonas).	0.998
I3KF91_ORENI	ift52	ENSONIP00000041602	ENSONIP00000053933	Intraflagellar transport 88 homolog.	Intraflagellar transport 52 homolog (Chlamydomonas).	0.999
I3KF91_ORENI	ift80	ENSONIP00000041602	ENSONIP00000032472	Intraflagellar transport 88 homolog.	Intraflagellar transport 80 homolog (Chlamydomonas).	0.999
I3KF91_ORENI	ift81	ENSONIP00000041602	ENSONIP00000069938	Intraflagellar transport 88 homolog.	Intraflagellar transport 81 homolog.	0.999
I3KF91_ORENI	rab35	ENSONIP00000041602	ENSONIP00000064238	Intraflagellar transport 88 homolog.	RAB35, member RAS oncogene family b.	0.868
LOC100703328	I3K0A7_ORENI	ENSONIP00000011867	ENSONIP00000080845	Si:dkey-16l2.16.	DENN/MADD domain containing 1A.	0.909
LOC100703328	I3KF91_ORENI	ENSONIP00000011867	ENSONIP00000041602	Si:dkey-16l2.16.	Intraflagellar transport 88 homolog.	0.868
LOC100703328	LOC100708443	ENSONIP00000011867	ENSONIP00000064167	Si:dkey-16l2.16.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.854
LOC100703328	LOC100708600	ENSONIP00000011867	ENSONIP00000039037	Si:dkey-16l2.16.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.854
LOC100703328	LOC100709395	ENSONIP00000011867	ENSONIP00000046236	Si:dkey-16l2.16.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.854
LOC100703328	ift22	ENSONIP00000011867	ENSONIP00000011712	Si:dkey-16l2.16.	Intraflagellar transport 22 homolog (Chlamydomonas).	0.873
LOC100703328	ift52	ENSONIP00000011867	ENSONIP00000053933	Si:dkey-16l2.16.	Intraflagellar transport 52 homolog (Chlamydomonas).	0.875
LOC100703328	ift80	ENSONIP00000011867	ENSONIP00000032472	Si:dkey-16l2.16.	Intraflagellar transport 80 homolog (Chlamydomonas).	0.860
LOC100703328	ift81	ENSONIP00000011867	ENSONIP00000069938	Si:dkey-16l2.16.	Intraflagellar transport 81 homolog.	0.861