STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100711182PR domain containing 8. (512 aa)    
Predicted Functional Partners:
PRDM6
PR/SET domain 6.
      
 0.635
bhlhe22
Basic helix-loop-helix family, member e22.
   
  
 0.536
Prdm16
LOW QUALITY PROTEIN: PR domain zinc finger protein 16.
    
 
 0.510
LOC100689838
Anthrax toxin receptor; Belongs to the ATR family.
   
 
 0.435
SH3RF3
SH3 domain containing ring finger 3.
    
 0.417
ENSONIP00000002644
Si:ch211-263k4.2.
    
 
0.408
PRDM15
PR/SET domain 15.
    
 
 0.407
prdm10
PR domain containing 10.
    
 
 0.407
LOC100709898
Uncharacterized protein.
    
 
 0.400
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.