STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100699175RRM domain-containing protein. (451 aa)    
Predicted Functional Partners:
pnisr
PNN-interacting serine/arginine-rich protein.
   
 
 0.901
pnn
Pinin, desmosome associated protein.
   
 
 0.878
LOC100710640
Serine and arginine rich splicing factor 2a.
   
 0.859
LOC100695205
RRM domain-containing protein.
   
 0.859
LOC100702944
Uncharacterized protein.
   
 
 0.845
LOC100692045
RNA binding motif protein 39b.
   
 
 0.845
srrm1
Serine/arginine repetitive matrix 1.
   
 0.843
puf60
Poly-U binding splicing factor b.
   
 
 0.819
LOC100693928
RRM domain-containing protein.
   
 0.818
LOC100698415
RNA-binding protein with serine-rich domain 1.
   
 0.818
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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