STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100692842Cytochrome c heme lyase; Links covalently the heme group to the apoprotein of cytochrome c. (267 aa)    
Predicted Functional Partners:
LOC100695060
Protoheme IX farnesyltransferase, mitochondrial; Converts protoheme IX and farnesyl diphosphate to heme O. Belongs to the ubiA prenyltransferase family.
   
 
 0.973
fech
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
     
 0.927
I3JST3_ORENI
Cytochrome c oxidase assembly homolog 15 (yeast).
 
  
 
 0.919
LOC100705244
Heme oxygenase 2b.
     
 0.901
LOC100700023
Heme oxygenase 2a.
     
 0.901
LOC100700287
Heme oxygenase; Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase.
     
 0.901
LOC100710567
Heme oxygenase; Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase.
     
 0.901
LOC100694607
Cytochrome c-1.
   
 
 0.790
mrpl35
Mitochondrial ribosomal protein L35.
   
  
 0.680
ndufv2
NADH:ubiquinone oxidoreductase core subunit V2.
   
  
 0.668
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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