rcvrn protein (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rcvrn

Recoverin a. (204 aa)

Predicted Functional Partners:

grk1

0.974

LOC100694101

0.972

grk7

0.965

LOC100702079

0.955

LOC100703644

0.954

LOC100697897

0.870

LOC100693630

0.870

LOC100691236

0.813

tmco3

0.808

LOC100711209

0.778

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100691236	LOC100693630	ENSONIP00000026444	ENSONIP00000016124	Rhodopsin.	Uncharacterized protein.	0.787
LOC100691236	LOC100694101	ENSONIP00000026444	ENSONIP00000005240	Rhodopsin.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.956
LOC100691236	LOC100697897	ENSONIP00000026444	ENSONIP00000008903	Rhodopsin.	Recoverin 3.	0.813
LOC100691236	LOC100702079	ENSONIP00000026444	ENSONIP00000007157	Rhodopsin.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.951
LOC100691236	LOC100703644	ENSONIP00000026444	ENSONIP00000017848	Rhodopsin.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.951
LOC100691236	LOC100711209	ENSONIP00000026444	ENSONIP00000038479	Rhodopsin.	Rhodopsin.	0.806
LOC100691236	grk1	ENSONIP00000026444	ENSONIP00000003977	Rhodopsin.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.963
LOC100691236	grk7	ENSONIP00000026444	ENSONIP00000013356	Rhodopsin.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.951
LOC100691236	rcvrn	ENSONIP00000026444	ENSONIP00000012155	Rhodopsin.	Recoverin a.	0.813
LOC100691236	tmco3	ENSONIP00000026444	ENSONIP00000003996	Rhodopsin.	Transmembrane and coiled-coil domains 3.	0.493
LOC100693630	LOC100691236	ENSONIP00000016124	ENSONIP00000026444	Uncharacterized protein.	Rhodopsin.	0.787
LOC100693630	LOC100694101	ENSONIP00000016124	ENSONIP00000005240	Uncharacterized protein.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.964
LOC100693630	LOC100702079	ENSONIP00000016124	ENSONIP00000007157	Uncharacterized protein.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.928
LOC100693630	LOC100703644	ENSONIP00000016124	ENSONIP00000017848	Uncharacterized protein.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.931
LOC100693630	LOC100711209	ENSONIP00000016124	ENSONIP00000038479	Uncharacterized protein.	Rhodopsin.	0.768
LOC100693630	grk1	ENSONIP00000016124	ENSONIP00000003977	Uncharacterized protein.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.957
LOC100693630	grk7	ENSONIP00000016124	ENSONIP00000013356	Uncharacterized protein.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.944
LOC100693630	rcvrn	ENSONIP00000016124	ENSONIP00000012155	Uncharacterized protein.	Recoverin a.	0.870
LOC100693630	tmco3	ENSONIP00000016124	ENSONIP00000003996	Uncharacterized protein.	Transmembrane and coiled-coil domains 3.	0.493
LOC100694101	LOC100691236	ENSONIP00000005240	ENSONIP00000026444	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	Rhodopsin.	0.956