STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100707266Uncharacterized protein. (330 aa)    
Predicted Functional Partners:
LOC100694465
Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.732
LOC100534432
Carbonyl reductase 1; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.731
tlcd1
TLC domain containing 1.
    
 
 0.728
LOC100690032
Zgc:158868; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.709
mcrip1
MAPK regulated corepressor interacting protein 1.
    
 
 0.658
akip1
A kinase (PRKA) interacting protein 1.
      
 0.657
sh3rf1
SH3 domain containing ring finger 1.
    
 
 0.644
saysd1
Si:ch211-59d15.9.
      
 0.639
fbxl16
F-box and leucine-rich repeat protein 16.
    
 
 0.634
tmem98
Transmembrane protein 98.
      
 0.613
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.