dsp protein (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

dsp

Desmoplakin a. (2714 aa)

Predicted Functional Partners:

LOC102081358

0.950

PKP1

0.949

I3KBL3_ORENI

0.949

LOC100707214

0.943

LOC100701331

0.943

pkp2

0.938

I3JL62_ORENI

0.893

ENSONIP00000065416

0.889

DSC1

0.866

itgb4

0.775

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DSC1	ENSONIP00000065416	ENSONIP00000012180	ENSONIP00000065416	Desmocollin 1; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	Desmoglein 2.	0.853
DSC1	I3JL62_ORENI	ENSONIP00000012180	ENSONIP00000009606	Desmocollin 1; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	Uncharacterized protein.	0.854
DSC1	I3KBL3_ORENI	ENSONIP00000012180	ENSONIP00000018508	Desmocollin 1; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	Plakophilin 1b.	0.963
DSC1	LOC100701331	ENSONIP00000012180	ENSONIP00000026933	Desmocollin 1; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	Uncharacterized protein.	0.974
DSC1	LOC100707214	ENSONIP00000012180	ENSONIP00000023673	Desmocollin 1; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	Junction plakoglobin a.	0.974
DSC1	LOC102081358	ENSONIP00000012180	ENSONIP00000012169	Desmocollin 1; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	Uncharacterized protein; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	0.853
DSC1	PKP1	ENSONIP00000012180	ENSONIP00000015520	Desmocollin 1; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	Plakophilin 1.	0.963
DSC1	dsp	ENSONIP00000012180	ENSONIP00000012159	Desmocollin 1; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	Desmoplakin a.	0.866
DSC1	pkp2	ENSONIP00000012180	ENSONIP00000074481	Desmocollin 1; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	Plakophilin-2 isoform X1.	0.987
ENSONIP00000065416	DSC1	ENSONIP00000065416	ENSONIP00000012180	Desmoglein 2.	Desmocollin 1; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	0.853
ENSONIP00000065416	I3KBL3_ORENI	ENSONIP00000065416	ENSONIP00000018508	Desmoglein 2.	Plakophilin 1b.	0.958
ENSONIP00000065416	LOC100701331	ENSONIP00000065416	ENSONIP00000026933	Desmoglein 2.	Uncharacterized protein.	0.939
ENSONIP00000065416	LOC100707214	ENSONIP00000065416	ENSONIP00000023673	Desmoglein 2.	Junction plakoglobin a.	0.939
ENSONIP00000065416	LOC102081358	ENSONIP00000065416	ENSONIP00000012169	Desmoglein 2.	Uncharacterized protein; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	0.805
ENSONIP00000065416	PKP1	ENSONIP00000065416	ENSONIP00000015520	Desmoglein 2.	Plakophilin 1.	0.958
ENSONIP00000065416	dsp	ENSONIP00000065416	ENSONIP00000012159	Desmoglein 2.	Desmoplakin a.	0.889
ENSONIP00000065416	pkp2	ENSONIP00000065416	ENSONIP00000074481	Desmoglein 2.	Plakophilin-2 isoform X1.	0.969
I3JL62_ORENI	DSC1	ENSONIP00000009606	ENSONIP00000012180	Uncharacterized protein.	Desmocollin 1; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.	0.854
I3JL62_ORENI	I3KBL3_ORENI	ENSONIP00000009606	ENSONIP00000018508	Uncharacterized protein.	Plakophilin 1b.	0.958
I3JL62_ORENI	LOC100701331	ENSONIP00000009606	ENSONIP00000026933	Uncharacterized protein.	Uncharacterized protein.	0.939