Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC102077430PHD-type domain-containing protein. (687 aa)    
Predicted Functional Partners:
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.519
rbbp5
Retinoblastoma binding protein 5.
    
 0.518
ENSONIP00000043233
Retinoic acid induced 1.
      
 0.492
LOC100711910
Zgc:91968.
      
 0.492
sbf2
SET binding factor 2.
   
 
 0.454
sbf1
SET binding factor 1.
   
 
 0.454
bbs4
Bardet-Biedl syndrome 4.
    
 0.443
ift80
Intraflagellar transport 80 homolog (Chlamydomonas).
    
 0.435
phf14
PHD finger protein 14.
   
 
 0.431
mphosph8
M-phase phosphoprotein 8.
    
 0.421
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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