STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100708065Si:ch73-281f12.4. (1168 aa)    
Predicted Functional Partners:
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
    
 
 0.545
exoc4
Exocyst complex component 4.
    
 0.532
LOC100706302
RAB11a, member RAS oncogene family, like.
   
 0.510
rab25
RAB25, member RAS oncogene family b.
   
 0.510
LOC100697758
Uncharacterized protein.
   
 0.510
LOC100700981
RAB, member of RAS oncogene family-like 2.
   
 0.510
LOC100697224
RAB11B, member RAS oncogene family, a.
   
 0.510
RAB11A
RAB11A, member RAS oncogene family.
   
 0.510
LOC100700728
RAB25, member RAS oncogene family a.
   
 0.510
RAB11B
Ras-related protein Rab-11B.
   
 0.510
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.