STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rundc1RUN domain containing 1. (573 aa)    
Predicted Functional Partners:
LOC100711895
Putative protein PTGES3L isoform X2.
      
 0.679
vps51
VPS51 subunit of GARP complex.
   
  
 0.611
ccdc186
Si:ch211-225b10.4.
      
 0.591
vps53
VPS53 subunit of GARP complex.
      
 0.575
vps54
VPS54 subunit of GARP complex.
      
 0.504
tmf1
TATA element modulatory factor 1.
      
 0.504
eipr1
EARP complex and GARP complex interacting protein 1.
      
 0.487
vps52
VPS52 subunit of GARP complex.
      
 0.477
vps50
VPS50 EARP/GARPII complex subunit.
      
 0.463
GCC2
GRIP and coiled-coil domain containing 2.
      
 0.448
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.