khdrbs2 protein (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

khdrbs2

KH domain containing, RNA binding, signal transduction associated 2. (344 aa)

Predicted Functional Partners:

LOC100697412

0.671

LOC100693162

0.671

LOC100693436

0.671

fyn

0.671

dhx9

0.659

grb2

0.656

rasa1

0.649

hnrnpk

0.648

LOC100706673

0.648

Cirbp

0.578

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cirbp	LOC100706673	ENSONIP00000012789	ENSONIP00000047018	Cold inducible RNA binding protein b.	Heterogeneous nuclear ribonucleoprotein K, like.	0.927
Cirbp	hnrnpk	ENSONIP00000012789	ENSONIP00000018888	Cold inducible RNA binding protein b.	Heterogeneous nuclear ribonucleoprotein K.	0.927
Cirbp	khdrbs2	ENSONIP00000012789	ENSONIP00000012252	Cold inducible RNA binding protein b.	KH domain containing, RNA binding, signal transduction associated 2.	0.578
LOC100693162	LOC100693436	ENSONIP00000018710	ENSONIP00000045419	Tyrosine-protein kinase.	Protein-tyrosine kinase 6 isoform X1.	0.492
LOC100693162	grb2	ENSONIP00000018710	ENSONIP00000064237	Tyrosine-protein kinase.	Growth factor receptor-bound protein 2b.	0.695
LOC100693162	khdrbs2	ENSONIP00000018710	ENSONIP00000012252	Tyrosine-protein kinase.	KH domain containing, RNA binding, signal transduction associated 2.	0.671
LOC100693162	rasa1	ENSONIP00000018710	ENSONIP00000043746	Tyrosine-protein kinase.	RAS p21 protein activator (GTPase activating protein) 1a.	0.578
LOC100693436	LOC100693162	ENSONIP00000045419	ENSONIP00000018710	Protein-tyrosine kinase 6 isoform X1.	Tyrosine-protein kinase.	0.492
LOC100693436	grb2	ENSONIP00000045419	ENSONIP00000064237	Protein-tyrosine kinase 6 isoform X1.	Growth factor receptor-bound protein 2b.	0.695
LOC100693436	khdrbs2	ENSONIP00000045419	ENSONIP00000012252	Protein-tyrosine kinase 6 isoform X1.	KH domain containing, RNA binding, signal transduction associated 2.	0.671
LOC100693436	rasa1	ENSONIP00000045419	ENSONIP00000043746	Protein-tyrosine kinase 6 isoform X1.	RAS p21 protein activator (GTPase activating protein) 1a.	0.578
LOC100697412	grb2	ENSONIP00000002805	ENSONIP00000064237	Tyrosine-protein kinase.	Growth factor receptor-bound protein 2b.	0.695
LOC100697412	khdrbs2	ENSONIP00000002805	ENSONIP00000012252	Tyrosine-protein kinase.	KH domain containing, RNA binding, signal transduction associated 2.	0.671
LOC100697412	rasa1	ENSONIP00000002805	ENSONIP00000043746	Tyrosine-protein kinase.	RAS p21 protein activator (GTPase activating protein) 1a.	0.578
LOC100706673	Cirbp	ENSONIP00000047018	ENSONIP00000012789	Heterogeneous nuclear ribonucleoprotein K, like.	Cold inducible RNA binding protein b.	0.927
LOC100706673	dhx9	ENSONIP00000047018	ENSONIP00000000368	Heterogeneous nuclear ribonucleoprotein K, like.	DEAH (Asp-Glu-Ala-His) box helicase 9.	0.913
LOC100706673	grb2	ENSONIP00000047018	ENSONIP00000064237	Heterogeneous nuclear ribonucleoprotein K, like.	Growth factor receptor-bound protein 2b.	0.754
LOC100706673	hnrnpk	ENSONIP00000047018	ENSONIP00000018888	Heterogeneous nuclear ribonucleoprotein K, like.	Heterogeneous nuclear ribonucleoprotein K.	0.916
LOC100706673	khdrbs2	ENSONIP00000047018	ENSONIP00000012252	Heterogeneous nuclear ribonucleoprotein K, like.	KH domain containing, RNA binding, signal transduction associated 2.	0.648
dhx9	LOC100706673	ENSONIP00000000368	ENSONIP00000047018	DEAH (Asp-Glu-Ala-His) box helicase 9.	Heterogeneous nuclear ribonucleoprotein K, like.	0.913