STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS4BVacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family. (529 aa)    
Predicted Functional Partners:
vta1
Vesicle (multivesicular body) trafficking 1.
   
 0.995
LOC100710999
Charged multivesicular body protein 5b.
   
 0.974
LOC100709386
Charged multivesicular body protein 5a.
   
 0.974
LOC100702665
Uncharacterized protein.
   
 0.972
chmp1b
Chromatin modifying protein 1B.
   
 0.972
chmp1a
Charged multivesicular body protein 1A.
   
 0.972
chmp2a
Charged multivesicular body protein 2A.
    
 0.960
I3J4H0_ORENI
IST1 factor associated with ESCRT-III.
   
 0.958
vps4a
Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family.
  
  
 
0.938
mlkl
Mixed lineage kinase domain like pseudokinase.
    
 0.904
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.