STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmbrd1LMBR1 domain containing 1. (538 aa)    
Predicted Functional Partners:
abcd4
ATP-binding cassette, sub-family D (ALD), member 4.
    
 0.953
abcd3
ATP-binding cassette, sub-family D (ALD), member 3a.
    
 0.768
LOC100703385
ATP-binding cassette, sub-family D (ALD), member 1.
    
 0.698
abcd2
ATP-binding cassette, sub-family D (ALD), member 2.
    
 0.698
mmaa
Metabolism of cobalamin associated A.
      
 0.669
mmachc
Metabolism of cobalamin associated C.
      
 0.659
mtr
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
      
 0.596
Mmab
Corrinoid adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
      
 0.596
mtrr
5-methyltetrahydrofolate-homocysteine methyltransferase reductase.
      
 0.593
mmut
Methylmalonyl CoA mutase.
      
 0.589
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.