STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100712090Cyclin Dx; Belongs to the cyclin family. (296 aa)    
Predicted Functional Partners:
pcna
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
    
 0.967
rbl1
Retinoblastoma-like 1 (p107).
    
 0.956
LOC100692495
Retinoblastoma-like 2 (p130).
    
 0.956
rb1
Retinoblastoma 1.
    
 0.956
cdkn1b
Cyclin-dependent kinase inhibitor 1Bb.
   
 0.947
LOC100711644
Cyclin-dependent kinase inhibitor 1Cb.
   
 0.947
LOC100698501
Uncharacterized protein.
   
 0.947
LOC102082412
Cyclin-dependent kinase inhibitor 1A.
   
 0.947
ENSONIP00000041766
Cyclin-dependent kinase inhibitor 1B.
   
 0.947
LOC100703282
Cyclin-dependent kinase inhibitor 1B.
   
 0.947
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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