Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Col19a1LAM_G_DOMAIN domain-containing protein. (300 aa)    
Predicted Functional Partners:
LOC100708902
Procollagen, type IX, alpha 2.
 
    
 0.716
COL25A1
Uncharacterized protein.
 
      0.675
LOC102075815
LAM_G_DOMAIN domain-containing protein.
 
      0.588
Col24a1
LAM_G_DOMAIN domain-containing protein.
     
 0.506
LOC102077756
Laminin, gamma 3.
   
 0.491
I3KEZ4_ORENI
Collagen, type VI, alpha 1.
   
 0.479
rptor
Regulatory associated protein of MTOR, complex 1.
    
 0.452
LOC100700514
Collagen, type VI, alpha 2.
   
 0.451
lama4
Laminin, alpha 4.
   
 0.428
uroc1
Urocanate hydratase 1.
    
 0.427
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.