STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100702449PPM-type phosphatase domain-containing protein. (526 aa)    
Predicted Functional Partners:
LOC100695032
RAB29, member RAS oncogene family.
    
 
 0.599
acbd3
Acyl-Coenzyme A binding domain containing 3.
    
 
 0.527
frmpd3
FERM and PDZ domain containing 3.
      
 0.521
Rilpl2
Rab interacting lysosomal protein-like 2.
      
 0.514
LOC100703328
Si:dkey-16l2.16.
    
 
 0.454
rab35
RAB35, member RAS oncogene family b.
    
 
 0.454
osgin2
Oxidative stress induced growth inhibitor family member 2.
      
 0.431
LOC100702338
Putative pyruvate dehydrogenase phosphatase isoenzyme 2.
      
 0.426
dolpp1
Dolichyldiphosphatase 1.
      
 0.410
vps35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
      
 0.409
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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