Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lrrc4bLeucine rich repeat containing 4Ba. (759 aa)    
Predicted Functional Partners:
LOC100702325
Leucine rich repeat containing 4Bb.
     
  0.916
LOC100694711
Protein tyrosine phosphatase receptor type Fa.
    
 0.830
PTPRF
Protein tyrosine phosphatase receptor type F.
    
 0.830
ENSONIP00000073183
annotation not available
    
 0.830
ntng1
Netrin g1a.
   
 0.744
LOC100691642
Vav 3 guanine nucleotide exchange factor b.
   
 0.744
LOC100692904
Netrin G2.
   
 0.714
NTNG2
Netrin g2a.
   
 0.714
LOC100704093
Leucine rich repeat containing 4C, genome duplicate b.
     
  0.601
PTPRD
Uncharacterized protein.
    
 0.532
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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