STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100704482Pre-B-cell leukemia homeobox 1a. (438 aa)    
Predicted Functional Partners:
sirt1
Deacetylase sirtuin-type domain-containing protein.
     
  0.866
hoxb1
Homeobox B1b.
    
 0.760
I3JA92_ORENI
Homeobox A1a.
    
 0.755
ENSONIP00000062889
Homeobox protein Hox-B1a-like.
    
 0.749
hoxc9
Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.
    
 
 0.720
LOC100702637
Homeobox B6b.
    
 0.717
LOC100697602
Homeobox domain-containing protein.
    
 0.717
hoxa3
Homeobox A4a.
    
 0.695
pknox1
Pbx/knotted 1 homeobox 1.1.
    
 0.683
pknox2
Pbx/knotted 1 homeobox 2.
    
 0.683
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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