Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100712328Integral membrane protein 2Cb. (256 aa)    
Predicted Functional Partners:
kndc1
Uncharacterized protein.
      
 0.574
slc35a5
Solute carrier family 35 member A5.
   
  
 0.550
pdzd11
PDZ domain containing 11.
   
  
 0.461
ndufs7
NADH:ubiquinone oxidoreductase core subunit S7; Belongs to the complex I 20 kDa subunit family.
    
 
 0.460
gak
Cyclin G associated kinase.
    
   0.441
gas2l3
Growth arrest-specific 2 like 3.
    
 
 0.430
pcsk7
Proprotein convertase subtilisin/kexin type 7; Belongs to the peptidase S8 family.
      
 0.424
mfsd10
Major facilitator superfamily domain containing 10.
      
 0.411
tnmd
Tenomodulin.
      
 0.410
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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