STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wdr27Uncharacterized protein. (811 aa)    
Predicted Functional Partners:
lg6h6orf120
Zgc:77929.
      
 0.889
GNG4
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4.
      
 0.826
SIPA1L2
Signal-induced proliferation-associated 1 like 2.
    
 
 0.787
smoc2
SPARC related modular calcium binding 2.
      
 0.772
phf10
PHD finger protein 10.
   
  
 0.772
Lrrc23
Leucine-rich repeat-containing protein 23 isoform X2.
    
 0.722
lg7hxorf56
Zgc:103697.
      
 0.702
klhdc8b
Kelch domain containing 8B.
     
 0.660
UNC79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.652
Dmpk
Dystrophia myotonica-protein kinase.
    
 0.627
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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