Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
trmutRNA 5-methylaminomethyl-2-thiouridylate methyltransferase. (430 aa)    
Predicted Functional Partners:
gtpbp3
GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
  
 0.930
mto1
Mitochondrial tRNA translation optimization 1.
  
 0.911
trmt12
tRNA methyltransferase 12 homolog.
   
  
 0.880
ndufa1
NADH:ubiquinone oxidoreductase subunit A1.
      
 0.871
rfk
Riboflavin kinase.
  
 
 0.808
trit1
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37; Belongs to the IPP transferase family.
  
  
 0.766
asl
Argininosuccinate lyase.
    
  0.762
ttc38
Tetratricopeptide repeat domain 38.
 
    
 0.728
ergic3
ERGIC and golgi 3.
  
 0.708
LOC100699046
Si:ch211-225b10.3.
  
 0.708
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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