Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cpne8Copine 8. (564 aa)    
Predicted Functional Partners:
sergef
Secretion regulating guanine nucleotide exchange factor.
   
  
 0.641
I3KXA9_ORENI
Fin bud initiation factor b.
      
 0.633
LOC100705141
Upper zone of growth plate and cartilage matrix associated b.
      
 0.629
ush1c
USH1 protein network component harmonin.
      
 0.619
rnaseh2b
Ribonuclease H2, subunit B.
   
 
 0.552
znf536
Zinc finger protein 536.
      
 0.481
ENSONIP00000060775
Zinc finger protein 516.
      
 0.481
rnaseh2a
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
   
 
 0.473
LOC100690639
Anoctamin.
      
 0.451
ano9
Anoctamin.
      
 0.451
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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