STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I3JU14_ORENIElongin B. (114 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
    
 0.977
eloc
Elongin C paralog a; Belongs to the SKP1 family.
   
 0.974
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
   
 0.972
cul2
Cullin 2; Belongs to the cullin family.
    
 0.970
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
     
 0.965
vhl
Von Hippel-Lindau tumor suppressor.
    
 0.962
rnf7
Ring finger protein 7.
   
 0.938
socs2
Suppressor of cytokine signaling 2.
    
 0.935
lrr1
Zgc:77287.
    
 0.930
LOC100703753
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.923
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.