Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cd2bp2CD2 (cytoplasmic tail) binding protein 2. (375 aa)    
Predicted Functional Partners:
prpf8
Pre-mRNA processing factor 8.
    
 0.991
txnl4a
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
   
 0.988
ddx23
DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.
   
 
 0.988
snrnp40
Small nuclear ribonucleoprotein 40 (U5).
   
 0.982
eftud2
Elongation factor Tu GTP binding domain containing 2.
    
 
 0.982
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
   
 
 0.978
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
   
 
 0.975
snrpb
Small nuclear ribonucleoprotein-associated protein.
    
 
 0.973
tssc4
Uncharacterized protein.
    
 
 0.971
eapp
E2f-associated phosphoprotein.
    
 
 0.969
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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