STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cd2bp2CD2 (cytoplasmic tail) binding protein 2. (375 aa)    
Predicted Functional Partners:
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
   
 
 0.989
ddx23
DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.
   
 
 0.948
eftud2
Elongation factor Tu GTP binding domain containing 2.
    
 
 0.926
txnl4a
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
    
 
 0.924
txnl4b
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
    
 0.923
prpf8
Pre-mRNA processing factor 8.
    
 
 0.913
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
   
 
 0.911
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
 
 0.894
tssc4
Uncharacterized protein.
    
 
 0.890
aar2
AAR2 splicing factor.
   
 
 0.859
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.