Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ppp1r21Protein phosphatase 1, regulatory subunit 21. (785 aa)    
Predicted Functional Partners:
lg7h12orf4
Zgc:154077.
    
 
 0.990
gatd1
Glutamine amidotransferase like class 1 domain containing 1.
    
   0.921
rsph3
Radial spoke head 3.
    
   0.916
tbck
TBC1 domain containing kinase.
   
 
 0.825
cryzl1
Crystallin, zeta (quinone reductase)-like 1.
    
   0.777
LOC100703700
Dystrobrevin.
    
   0.762
LOC100702539
Dystrobrevin.
    
   0.762
dtna
Dystrobrevin.
    
   0.762
mrpl41
Mitochondrial ribosomal protein L41.
      
 0.734
ENSONIP00000070007
Dystrobrevin beta-like.
    
   0.632
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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