STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSONIP00000012427Autoimmune regulator. (369 aa)    
Predicted Functional Partners:
LOC100711479
Retinoblastoma binding protein 4.
   
 0.853
Kdm1a
Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family.
   
 0.832
LOC100706337
WD_REPEATS_REGION domain-containing protein.
   
 0.809
LOC100695351
Retinoblastoma binding protein 4, like.
   
 0.809
mta2
Metastasis associated 1 family, member 2.
   
 0.796
LOC100696254
Metastasis associated 1 family, member 3.
   
 0.796
Mta1
Metastasis associated 1.
   
 0.796
gatad2b
GATA zinc finger domain containing 2B.
   
 0.780
LOC100694214
GATA zinc finger domain containing 2Ab.
   
 0.767
LOC100705552
GATA zinc finger domain containing 2A.
   
 0.767
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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