STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmub1Transmembrane and ubiquitin-like domain containing 1. (269 aa)    
Predicted Functional Partners:
LOC100709059
Ring finger protein 170.
    
 
 0.668
LOC100709255
ER lipid raft associated 2.
    
 
 0.631
LOC100692599
ER lipid raft associated 1.
    
 
 0.631
tmub2
Transmembrane and ubiquitin-like domain containing 2.
  
 
 
0.607
lg6h6orf120
Zgc:77929.
      
 0.591
Tmem259
Transmembrane protein 259.
    
 
 0.576
I3KYI2_ORENI
Transmembrane protein 126A.
      
 0.575
ube2j1
Ubiquitin-conjugating enzyme E2, J1.
   
  
 0.510
LOC100690679
Family with sequence similarity 8 member A1b.
      
 0.453
Tmco1
Calcium load-activated calcium channel.
      
 0.453
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.