tmub1 protein (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

tmub1

Transmembrane and ubiquitin-like domain containing 1. (269 aa)

Predicted Functional Partners:

LOC100709059

0.957

tmub2

0.918

LOC100709255

0.905

LOC100692599

0.905

Tmem259

0.885

I3K7B1_ORENI

0.802

RNF5

0.802

rnf185

0.802

lg6h6orf120

0.765

I3KYI2_ORENI

0.702

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I3K7B1_ORENI	LOC100692599	ENSONIP00000017006	ENSONIP00000073250	RING-type domain-containing protein.	ER lipid raft associated 1.	0.806
I3K7B1_ORENI	LOC100709255	ENSONIP00000017006	ENSONIP00000031281	RING-type domain-containing protein.	ER lipid raft associated 2.	0.806
I3K7B1_ORENI	Tmem259	ENSONIP00000017006	ENSONIP00000028043	RING-type domain-containing protein.	Transmembrane protein 259.	0.693
I3K7B1_ORENI	lg6h6orf120	ENSONIP00000017006	ENSONIP00000026005	RING-type domain-containing protein.	Zgc:77929.	0.446
I3K7B1_ORENI	rnf185	ENSONIP00000017006	ENSONIP00000077231	RING-type domain-containing protein.	Ring finger protein 185.	0.866
I3K7B1_ORENI	tmub1	ENSONIP00000017006	ENSONIP00000012542	RING-type domain-containing protein.	Transmembrane and ubiquitin-like domain containing 1.	0.802
I3K7B1_ORENI	tmub2	ENSONIP00000017006	ENSONIP00000001036	RING-type domain-containing protein.	Transmembrane and ubiquitin-like domain containing 2.	0.601
I3KYI2_ORENI	tmub1	ENSONIP00000026179	ENSONIP00000012542	Transmembrane protein 126A.	Transmembrane and ubiquitin-like domain containing 1.	0.702
LOC100692599	I3K7B1_ORENI	ENSONIP00000073250	ENSONIP00000017006	ER lipid raft associated 1.	RING-type domain-containing protein.	0.806
LOC100692599	LOC100709059	ENSONIP00000073250	ENSONIP00000081113	ER lipid raft associated 1.	Ring finger protein 170.	0.871
LOC100692599	RNF5	ENSONIP00000073250	ENSONIP00000055759	ER lipid raft associated 1.	Ring finger protein 5.	0.806
LOC100692599	Tmem259	ENSONIP00000073250	ENSONIP00000028043	ER lipid raft associated 1.	Transmembrane protein 259.	0.528
LOC100692599	lg6h6orf120	ENSONIP00000073250	ENSONIP00000026005	ER lipid raft associated 1.	Zgc:77929.	0.710
LOC100692599	rnf185	ENSONIP00000073250	ENSONIP00000077231	ER lipid raft associated 1.	Ring finger protein 185.	0.806
LOC100692599	tmub1	ENSONIP00000073250	ENSONIP00000012542	ER lipid raft associated 1.	Transmembrane and ubiquitin-like domain containing 1.	0.905
LOC100692599	tmub2	ENSONIP00000073250	ENSONIP00000001036	ER lipid raft associated 1.	Transmembrane and ubiquitin-like domain containing 2.	0.784
LOC100709059	LOC100692599	ENSONIP00000081113	ENSONIP00000073250	Ring finger protein 170.	ER lipid raft associated 1.	0.871
LOC100709059	LOC100709255	ENSONIP00000081113	ENSONIP00000031281	Ring finger protein 170.	ER lipid raft associated 2.	0.871
LOC100709059	Tmem259	ENSONIP00000081113	ENSONIP00000028043	Ring finger protein 170.	Transmembrane protein 259.	0.660
LOC100709059	lg6h6orf120	ENSONIP00000081113	ENSONIP00000026005	Ring finger protein 170.	Zgc:77929.	0.756