STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp38Ubiquitin specific peptidase 38; Belongs to the peptidase C19 family. (1034 aa)    
Predicted Functional Partners:
wdr48
WD repeat domain 48b.
   
 0.909
rps27a
Ribosomal protein S27a.
    
 0.909
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.902
ENSONIP00000047919
Ubiquitin B.
    
 0.869
wdr20
WD repeat domain 20a.
   
 0.776
LOC100702516
WD repeat domain 20b.
   
 0.776
ENSONIP00000062498
LOW QUALITY PROTEIN: WD repeat-containing protein 20.
   
 0.776
fancd2
FA complementation group D2.
    
 0.747
fanci
FA complementation group I.
   
 0.706
pcna
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
  0.654
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.