Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
swt1SWT1 RNA endoribonuclease homolog. (845 aa)    
Predicted Functional Partners:
trmt1l
tRNA methyltransferase 1-like; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.
   
  
 0.772
Ivns1abp
Influenza virus NS1A binding protein a.
      
 0.754
agtrap
Angiotensin II receptor-associated protein.
      
 0.708
psmc3ip
PSMC3 interacting protein.
      
 0.703
COQ3
Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.
      
 0.702
gtf2h5
General transcription factor IIH, polypeptide 5.
      
 0.680
ENSONIP00000076186
Ribosomal RNA processing 15 homolog.
      
 0.640
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
      
 0.611
smg5
SMG5 nonsense mediated mRNA decay factor.
    
 
 0.606
nfyb
Nuclear transcription factor Y, beta a.
      
 0.601
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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