STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prg4Proteoglycan 4b. (611 aa)    
Predicted Functional Partners:
LOC100701134
Aggrecan b.
    
 0.467
I3KB63_ORENI
Link domain-containing protein.
   
 0.455
LOC100702284
TIMP metallopeptidase inhibitor 2b.
    
 0.433
timp4
TIMP metallopeptidase inhibitor 4, tandem duplicate 2.
    
 0.433
timp2
TIMP metallopeptidase inhibitor 2a.
    
 0.433
TIMP3
TIMP metallopeptidase inhibitor 3.
    
 0.433
LOC100702432
Uncharacterized protein.
      
 0.400
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.