STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sh3d19SH3 domain containing 19. (1042 aa)    
Predicted Functional Partners:
sh3yl1
SH3 and SYLF domain containing 1.
    
   0.934
pum1
Pumilio RNA-binding family member 1.
     
 0.798
ficd
FIC domain containing.
      
 0.760
Cwc22
MI domain-containing protein.
     
 0.637
Sart3
Spliceosome associated factor 3, U4/U6 recycling protein.
      
 0.626
exosc2
Exosome component 2.
      
 0.614
LOC100690198
Clathrin interactor 1b.
     
 0.611
LOC100707016
Clathrin interactor 1a.
     
 0.611
vta1
Vesicle (multivesicular body) trafficking 1.
    
   0.578
ankef1
Ankyrin repeat and EF-hand domain containing 1a.
     
 0.560
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.