STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paskPAS domain containing serine/threonine kinase. (1219 aa)    
Predicted Functional Partners:
LOC100710204
UTP--glucose-1-phosphate uridylyltransferase.
   
 0.821
ugp2
UTP--glucose-1-phosphate uridylyltransferase.
   
 0.821
ppp1r7
Protein phosphatase 1, regulatory (inhibitor) subunit 7.
    
 0.766
LOC100693549
Cardiomyopathy associated 5.
    
 0.736
I3KEA6_ORENI
Small nuclear RNA activating complex, polypeptide 5.
      
 0.655
gys2
Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.
   
 0.535
gys1
Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.
   
 0.535
drg1
Developmentally regulated GTP binding protein 1.
      
 0.526
Prkn
E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.
    
  0.514
LOC100697991
Receptor-type tyrosine-protein phosphatase zeta.
    
 0.513
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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