STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gpatch11G patch domain containing 11. (261 aa)    
Predicted Functional Partners:
rbm17
RNA binding motif protein 17.
   
 
 0.973
ENSONIP00000000293
Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2.
   
 0.930
Snrpa1
Small nuclear ribonucleoprotein polypeptide A.
   
 
 0.912
Snrpf
Small nuclear ribonucleoprotein F.
   
 0.816
sf3a3
Splicing factor 3a, subunit 3.
   
 
 0.761
ccdc130
Coiled-coil domain containing 130.
    
 
 0.746
pde12
Phosphodiesterase 12.
    
 0.739
lin52
Protein lin-52 homolog.
      
 0.712
pigq
Phosphatidylinositol glycan anchor biosynthesis, class Q.
      
 0.701
stk19
Serine/threonine kinase 19.
      
 0.676
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.