STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
capn10Calpain 10; Belongs to the peptidase C2 family. (694 aa)    
Predicted Functional Partners:
cast
Calpastatin isoform X5.
    
 0.734
LOC100700838
Calpain, small subunit 1 b.
 
 
 0.691
LOC100695842
Calpain small subunit 1.
 
 
 0.685
hgd
Homogentisate 1,2-dioxygenase.
      
 0.580
agt
Angiotensinogen; Belongs to the serpin family.
     
 0.569
ENSONIP00000000682
Intersectin 2a.
   
 
  0.538
I3KKD0_ORENI
Intersectin 2b.
   
 
  0.538
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
   
 
 0.447
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.