Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nid1Nidogen 1a. (1191 aa)    
Predicted Functional Partners:
ENSONIP00000015032
Nidogen 2a (osteonidogen).
     
  0.866
I3KII9_ORENI
Heparan sulfate proteoglycan 2.
   
 0.844
lama4
Laminin, alpha 4.
   
 0.768
LAMA3
Laminin subunit alpha 3.
   
 0.768
agrn
Agrin.
   
 0.683
lamc1
Laminin, gamma 1.
   
 0.665
lamc2
Laminin subunit gamma 2.
   
 0.665
LOC102077756
Laminin, gamma 3.
   
 0.665
LAMA2
Laminin subunit alpha 2.
   
 0.648
tnfaip6
Tumor necrosis factor, alpha-induced protein 6.
     
 0.647
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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