Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ptprcProtein tyrosine phosphatase receptor type C. (1377 aa)    
Predicted Functional Partners:
LOC100707727
Tetraspanin.
     
 0.900
I3JJX1_ORENI
Uncharacterized protein.
     
  0.891
ganab
Glucosidase, alpha; neutral AB; Belongs to the glycosyl hydrolase 31 family.
    
 
 0.879
lck
Tyrosine-protein kinase.
   
 0.876
LOC102083276
Uncharacterized protein.
     
  0.866
I3JBF3_ORENI
Uncharacterized protein.
     
  0.866
I3KX32_ORENI
Ig-like domain-containing protein.
   
 
 0.859
cd3e
T-cell surface glycoprotein CD3 epsilon chain.
   
 0.844
I3KB63_ORENI
Link domain-containing protein.
   
 
 0.844
SRC
Tyrosine-protein kinase.
   
 0.827
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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