STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcm1Pericentriolar material 1. (2120 aa)    
Predicted Functional Partners:
bbs4
Bardet-Biedl syndrome 4.
   
 
 0.988
cep131
Centrosomal protein 131.
   
 0.986
cep72
Centrosomal protein 72.
    
 
 0.984
cep290
Centrosomal protein 290.
   
 
 0.974
ofd1
OFD1 centriole and centriolar satellite protein.
   
 
 0.973
mib1
Mindbomb E3 ubiquitin protein ligase 1.
    
 0.957
AKAP9
A-kinase anchoring protein 9.
   
 0.956
fopnl
LisH domain-containing protein FOPNL isoform X2.
    
 
 0.926
kiaa0753
Si:dkey-243i1.1.
    
 
 0.901
ENSONIP00000041799
annotation not available
    
  0.824
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.