Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fam160b1Family with sequence similarity 160 member B1. (788 aa)    
Predicted Functional Partners:
pald1
Phosphatase domain containing paladin 1a.
      
 0.682
HOOK3
Hook microtubule tethering protein 3.
    
 
 0.605
I3J3C3_ORENI
Hook microtubule-tethering protein 1.
    
 
 0.605
Fcf1
FCF1 rRNA-processing protein.
      
 0.604
aktip
Akt interacting protein.
    
 
 0.574
hook2
Hook microtubule-tethering protein 2.
    
 
 0.502
ankfy1
Ankyrin repeat and FYVE domain containing 1.
      
 0.494
tnfsf13b
TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.
    
   0.467
ints10
Integrator complex subunit 10.
      
 0.451
dpf1
D4, zinc and double PHD fingers family 1.
      
 0.423
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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