STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100705552GATA zinc finger domain containing 2A. (735 aa)    
Predicted Functional Partners:
LOC100694214
GATA zinc finger domain containing 2Ab.
  
  
 
0.960
gatad2b
GATA zinc finger domain containing 2B.
     
0.959
mta2
Metastasis associated 1 family, member 2.
   
 0.898
LOC100696254
Metastasis associated 1 family, member 3.
   
 0.898
Mta1
Metastasis associated 1.
   
 0.898
LOC100705962
Chromodomain helicase DNA binding protein 4a.
   
 0.888
LOC100698867
Chromodomain helicase DNA binding protein 3.
   
 0.888
chd4
Uncharacterized protein.
   
 0.888
chd5
Chromodomain helicase DNA binding protein 5.
   
 0.888
LOC100691799
Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
   
 0.849
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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