Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SUGP1SURP and G-patch domain containing 1. (636 aa)    
Predicted Functional Partners:
rbm17
RNA binding motif protein 17.
   
 
 0.988
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 0.974
LOC100708876
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 0.974
LOC100696985
HIV-1 Tat specific factor 1.
     
 0.963
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
     
  0.962
dnajc8
DnaJ (Hsp40) homolog, subfamily C, member 8.
     
  0.962
TCERG1
Transcription elongation regulator 1.
   
 
  0.955
Ppp1r8
Protein phosphatase 1, regulatory subunit 8b.
     
  0.954
Sf1
Splicing factor 1.
   
 0.884
rbm5
RNA binding motif protein 5.
   
 0.882
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.