Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pdlim3PDZ and LIM domain 3a. (347 aa)    
Predicted Functional Partners:
Pdlim1
PDZ and LIM domain 1 (elfin).
  
  
 
0.957
pdlim4
PDZ and LIM domain protein 1/2/3/4.
     
 
0.921
LOC100702294
PDZ and LIM domain 2 (mystique).
     
0.921
Pdlim7
PDZ and LIM domain 7.
   
 
0.709
bmpr1b
PDZ and LIM domain 5a.
   
 
0.697
LOC100697721
PDZ and LIM domain 5b.
   
 
0.695
strbp
Spermatid perinuclear RNA binding protein.
      
 0.695
ENSONIP00000040829
annotation not available
      
 0.684
LOC100707522
LIM domain binding 3b.
     
 
0.666
actn3
Actinin alpha 3b.
   
 
 0.656
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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