STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100709608Leucine rich repeat containing 29. (655 aa)    
Predicted Functional Partners:
fbxo33
F-box protein 33.
      
 0.736
fbxo25
F-box protein 25.
     
 0.667
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.651
LOC100698470
Zgc:175088.
     
 0.619
rnf7
Ring finger protein 7.
    
 0.540
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.540
LOC100711101
F-box protein 32.
     
 0.526
FBXO48
F-box protein 48.
      
 0.520
ENSONIP00000044346
F-box only protein 6.
     
 0.491
ercc6
Excision repair cross-complementation group 6.
    
 
 0.471
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
Server load: medium (66%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.