Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Atoh7Atonal bHLH transcription factor 7. (148 aa)    
Predicted Functional Partners:
I3JUP0_ORENI
POU domain protein.
    
 
 0.765
VSX2
Visual system homeobox 2.
      
 0.737
Vsx1
Visual system homeobox 1 homolog, chx10-like.
      
 0.694
kif11
Kinesin family member 11; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 
 0.657
LOC100712477
Uncharacterized protein.
      
 0.656
foxn4
Forkhead box N4.
      
 0.652
LOC100700383
Growth associated protein 43.
      
 0.629
Zpr1
ZPR1 zinc finger.
      
 0.622
tspan12
Tetraspanin.
      
 0.613
fzd4
Frizzled class receptor 4; Belongs to the G-protein coupled receptor Fz/Smo family.
      
 0.607
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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