STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100691007RIB43A domain with coiled-coils 2. (320 aa)    
Predicted Functional Partners:
tekt2
Tektin 2 (testicular).
   
 
 0.756
tekt3
Tektin 3.
   
 
 0.751
LOC100690350
Coiled-coil domain containing 114.
   
 
 0.725
CASK
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
    
 0.709
LOC100693503
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
    
 0.709
Efhc1
EF-hand domain (C-terminal) containing 1.
   
 
 0.697
I3KAM4_ORENI
Armadillo repeat containing 3.
   
 
 0.695
Mns1
Meiosis-specific nuclear structural 1.
    
 0.684
fam183a
Family with sequence similarity 183 member A.
    
 
 0.676
armc4
Armadillo repeat containing 4.
   
 
 0.668
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.