STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100704015Rho guanine nucleotide exchange factor (GEF) 1a. (909 aa)    
Predicted Functional Partners:
LOC100694803
Ras homolog family member Cb.
   
 0.959
LOC100710477
Ras homolog gene family, member Ab.
   
 0.959
LOC100707445
Uncharacterized protein.
   
 0.959
LOC100698785
Uncharacterized protein.
   
 0.959
cgn
Cingulin a.
     
 0.954
LOC100710602
Cingulin b.
     
 0.954
cgnl1
Cingulin-like 1.
     
 0.944
ARHGEF2
Rho/rac guanine nucleotide exchange factor (GEF) 2.
  
  
 
0.902
LOC100695471
Uncharacterized protein.
     
  0.900
LOC100693083
Uncharacterized protein.
   
 0.613
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.